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Date, 2003

First Came the Genome... Now the Proteome

By Robert Krulwich
ABC News


Genes don't actually do anything themselves. They hold instructions for making proteins, and it's the proteins that actually perform functions in our bodies.

"When you look at yourself in a mirror, you're looking mostly at protein. The outer layer of your body is made of protein Ñ keratin Ñ your hair is made of keratin, your cornea is made of protein," says William Haseltine, chairman of Human Genome Sciences, one of the private companies that has been decoding the genome. "Proteins are the essence of life."

We're Like a Fruitfly?

Preliminary findings from the government-led Human Genome Project estimate that human beings have 30,000-40,000 genes Ñ only twice as many as the humble fruitfly. (Haseltine's group believes that humans have more genes, as many as 120,000.)

"That's really bothersome to many people," says Eric Lander, director of the Whitehead Institute's Center for Genome Research at the Massachusetts Institute of Technology, part of the Human Genome Project. "Because we really like to think of ourselves as a lot more than twice as complex."

But humans are far more complex than fruitflies. Genetic scientists suspect that is because our genes are better at making proteins than the genes in a fruitfly.

A gene that appears identical in both creatures might produce one or two proteins in a fruitfly, but four in a human being. And in a human those four proteins could combine and interact to make bigger and more proteins.

"So when you might only have say 30,000 genes, you could have 100,000 distinct proteins, and when you're done putting all the different modifications on them, there might be a million of them," says Lander.

Lander and his colleagues are investigating how and why human genes produce more proteins than other creatures' genes. "This is just the beginning of a very comprehensive, systematic program to understand all the components and how they connect with each other," he says.

Proteomics Ñ the study of the proteome Ñ promises to be the next big thing. Understanding proteins could lead to new advances in medicine and, theoretically, ways to enhance the bodies we are born with.

New protein businesses and protein maps and libraries are being started all over the world, and Wall Street is very interested.

Fixing Sick Proteins

Proteins can be visualized as tangles of ribbons, each with a specific shape that defines its identity and function. Diseases can distort a protein's shape, impairing its function by making it unrecognizable to other proteins programmed to interact with it.

(Photo: Anatomical Travelogue)

Healthy Protein. This is a visualization of a healthy protein that you can find in humans' lung cells. The protein's function is to move salt in and out of the lung cells. Every hook, every fold is locked in place, so other proteins can work with it to regulate salt levels. (The loops and folds in this illustration are hypothetical; scientists have not yet identified the protein's actual shape.)

(Photo: Anatomical Travelogue)

Misshapen Protein. This is the same protein affected by cystic fibrosis. The disease causes genes to produce misshapen proteins in the lung cells Ñ in this illustration distorting the loop at lower left. Because it has the wrong shape, it is ignored or destroyed by other proteins, so it can't do its job. Salt builds up in the lung cells, producing thick mucus that can become infected and kill the patient.

(Photo: Anatomical Travelogue)

Fixing the Protein. At some point in the future, drug companies may be able to create proteins to fix the misshapen protein. The repair protein, at left, would twist the loop back into place, restoring the misshapen protein to its healthy form. Salt would be regulated in the patient's lungs, and they would no longer be in danger from mucus build-up.

Some companies are conducting preliminary trials on protein-fixing medicines, but it's unclear whether the drugs will work, or how long it might take to learn more about proteins.

"It's always risky to predict timetables," warns Collins.


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